Argo File Formats: Blast
Argo can load traditional style blast output files as feature tracks.
When the blast result file is selected and opened, an option dialog box appears asking if the subject coordinates should be used to draw the feature.
Sample blast files are listed below.
To view these files in Argo, superimpose them on the following fasta sequence: super_15687.fa
| File | Use subject coordinates? | Description |
|---|---|---|
| sc15687_huints_tbn.out | yes | tblastn with human integrins as the queries and super_15687.fa as database. |
| sc15687_otherints_tbn.out | no | tblastn with integrins from a variety of non-mammalian species as the queries and super_15687.fa as database |
| sc15687_v_CiESTtbx.out | no | tblastx with super_15687.fa as query and several EST assemblies encoding the probable ortholog of this gene in Ciona intestinalis, a related sea squirt that is about as closely related to Ciona savignyi as human is to mouse. |
These blast results were generated with blastall 2.2.4. Other text-only versions of blast output can work with the Blast loader as well. For Blast2seqs, use: