Argo File Formats: GENSCAN
The output of any gene prediction algorithm can loaded into Argo as long as it is possible to obtain (or convert) the output in gff or GENSCAN format. Some possible options include:
- GENSCAN: http://genes.mit.edu/GENSCAN.html or http://bioweb.pasteur.fr/seqanal/interfaces/genscan-simple.html
- GenomeScan: http://genes.mit.edu/genomescan.html
- GeneID: http://genome.imim.es/software/geneid/geneid.html
- Augustus: http://augustus.gobics.de/
- Genewise: http://www.ebi.ac.uk/Wise2/advanced.html
Sample output files can be found here: sc15687.gs and sc15687.geos
To view these sample files in argo, superimpose them on this fasta sequence.