## gff-version 2 ## date Thu Mar 4 15:21:12 2004 ## source-version: geneid v 1.1 -- geneid@imim.es # Sequence sc_iso3_15687 - Length = 322648 bps # Optimal Gene Structure. 32 genes. Score = 541.196747 # Gene 1 (Forward). 1 exons. 553 aa. Score = 27.132790 sc_iso3_15687 geneid_iso3 Terminal 10633 12289 27.13 + 1 sc_iso3_15687_1 # Gene 2 (Reverse). 1 exons. 71 aa. Score = 2.522195 sc_iso3_15687 geneid_iso3 Single 14500 14712 2.52 - 0 sc_iso3_15687_2 # Gene 3 (Forward). 8 exons. 735 aa. Score = 28.410445 sc_iso3_15687 geneid_iso3 First 16451 17443 16.75 + 0 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Internal 20805 20944 0.44 + 0 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Internal 25405 25638 4.86 + 1 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Internal 28326 28620 1.74 + 1 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Internal 29163 29218 -0.38 + 0 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Internal 29377 29542 3.53 + 1 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Internal 30435 30600 1.48 + 0 sc_iso3_15687_3 sc_iso3_15687 geneid_iso3 Terminal 30810 30964 -0.01 + 2 sc_iso3_15687_3 # Gene 4 (Forward). 1 exons. 176 aa. Score = 3.639593 sc_iso3_15687 geneid_iso3 Single 31624 32151 3.64 + 0 sc_iso3_15687_4 # Gene 5 (Forward). 4 exons. 194 aa. Score = 11.153836 sc_iso3_15687 geneid_iso3 First 33714 33771 0.38 + 0 sc_iso3_15687_5 sc_iso3_15687 geneid_iso3 Internal 33930 34021 2.47 + 2 sc_iso3_15687_5 sc_iso3_15687 geneid_iso3 Internal 34738 34892 3.22 + 0 sc_iso3_15687_5 sc_iso3_15687 geneid_iso3 Terminal 37581 37857 5.09 + 1 sc_iso3_15687_5 # Gene 6 (Reverse). 4 exons. 191 aa. Score = 4.707108 sc_iso3_15687 geneid_iso3 Terminal 51278 51609 5.91 - 2 sc_iso3_15687_6 sc_iso3_15687 geneid_iso3 Internal 52130 52211 0.52 - 0 sc_iso3_15687_6 sc_iso3_15687 geneid_iso3 Internal 52612 52675 -0.76 - 1 sc_iso3_15687_6 sc_iso3_15687 geneid_iso3 First 55162 55256 -0.97 - 0 sc_iso3_15687_6 # Gene 7 (Forward). 5 exons. 263 aa. Score = 6.302871 sc_iso3_15687 geneid_iso3 First 58380 58439 -2.38 + 0 sc_iso3_15687_7 sc_iso3_15687 geneid_iso3 Internal 59291 59432 2.72 + 0 sc_iso3_15687_7 sc_iso3_15687 geneid_iso3 Internal 59914 60058 2.57 + 2 sc_iso3_15687_7 sc_iso3_15687 geneid_iso3 Internal 60655 60739 -0.81 + 1 sc_iso3_15687_7 sc_iso3_15687 geneid_iso3 Terminal 61805 62161 4.20 + 0 sc_iso3_15687_7 # Gene 8 (Reverse). 4 exons. 289 aa. Score = 13.918275 sc_iso3_15687 geneid_iso3 Terminal 66942 67260 1.21 - 1 sc_iso3_15687_8 sc_iso3_15687 geneid_iso3 Internal 72430 72692 10.93 - 0 sc_iso3_15687_8 sc_iso3_15687 geneid_iso3 Internal 77731 77882 0.14 - 2 sc_iso3_15687_8 sc_iso3_15687 geneid_iso3 First 78196 78328 1.64 - 0 sc_iso3_15687_8 # Gene 9 (Reverse). 1 exons. 121 aa. Score = 1.632158 sc_iso3_15687 geneid_iso3 Single 79608 79970 1.63 - 0 sc_iso3_15687_9 # Gene 10 (Forward). 7 exons. 303 aa. Score = 6.032076 sc_iso3_15687 geneid_iso3 First 88511 88684 4.14 + 0 sc_iso3_15687_10 sc_iso3_15687 geneid_iso3 Internal 89470 89546 -0.58 + 0 sc_iso3_15687_10 sc_iso3_15687 geneid_iso3 Internal 90925 91091 0.38 + 1 sc_iso3_15687_10 sc_iso3_15687 geneid_iso3 Internal 91775 91902 1.90 + 2 sc_iso3_15687_10 sc_iso3_15687 geneid_iso3 Internal 93431 93555 0.05 + 0 sc_iso3_15687_10 sc_iso3_15687 geneid_iso3 Internal 96562 96684 1.38 + 1 sc_iso3_15687_10 sc_iso3_15687 geneid_iso3 Terminal 99147 99261 -1.23 + 1 sc_iso3_15687_10 # Gene 11 (Reverse). 8 exons. 490 aa. Score = 23.414984 sc_iso3_15687 geneid_iso3 Terminal 100898 101071 1.49 - 0 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 Internal 101387 101560 4.59 - 0 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 Internal 101703 101846 2.59 - 0 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 Internal 108916 109067 0.60 - 2 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 Internal 109932 110020 -0.51 - 1 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 Internal 110658 110872 4.15 - 0 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 Internal 111291 111662 5.19 - 0 sc_iso3_15687_11 sc_iso3_15687 geneid_iso3 First 111710 111859 5.31 - 0 sc_iso3_15687_11 # Gene 12 (Reverse). 2 exons. 110 aa. Score = 0.988048 sc_iso3_15687 geneid_iso3 Terminal 112391 112608 2.74 - 2 sc_iso3_15687_12 sc_iso3_15687 geneid_iso3 First 112919 113030 -1.75 - 0 sc_iso3_15687_12 # Gene 13 (Forward). 1 exons. 188 aa. Score = 2.013902 sc_iso3_15687 geneid_iso3 Single 113637 114200 2.01 + 0 sc_iso3_15687_13 # Gene 14 (Reverse). 6 exons. 371 aa. Score = 15.453559 sc_iso3_15687 geneid_iso3 Terminal 119699 119815 0.98 - 0 sc_iso3_15687_14 sc_iso3_15687 geneid_iso3 Internal 120843 121020 -0.22 - 1 sc_iso3_15687_14 sc_iso3_15687 geneid_iso3 Internal 122839 123053 4.13 - 0 sc_iso3_15687_14 sc_iso3_15687 geneid_iso3 Internal 123112 123263 -2.16 - 2 sc_iso3_15687_14 sc_iso3_15687 geneid_iso3 Internal 123512 123812 7.42 - 0 sc_iso3_15687_14 sc_iso3_15687 geneid_iso3 First 123860 124009 5.30 - 0 sc_iso3_15687_14 # Gene 15 (Reverse). 3 exons. 153 aa. Score = 3.767124 sc_iso3_15687 geneid_iso3 Terminal 124537 124754 2.74 - 2 sc_iso3_15687_15 sc_iso3_15687 geneid_iso3 Internal 125792 125970 1.32 - 1 sc_iso3_15687_15 sc_iso3_15687 geneid_iso3 First 127921 127982 -0.30 - 0 sc_iso3_15687_15 # Gene 16 (Reverse). 1 exons. 328 aa. Score = 24.732161 sc_iso3_15687 geneid_iso3 Single 134014 134997 24.73 - 0 sc_iso3_15687_16 # Gene 17 (Forward). 15 exons. 1262 aa. Score = 57.196651 sc_iso3_15687 geneid_iso3 First 142814 142900 0.22 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 143201 143353 0.27 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 144134 144197 0.80 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 147467 147606 2.70 + 2 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 148213 148337 1.20 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 148936 148960 -0.39 + 1 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 150790 150934 -0.76 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 150987 151113 4.61 + 2 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 159416 159538 4.08 + 1 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 160145 161951 37.23 + 1 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 162009 162138 0.24 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 162342 162508 1.93 + 2 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 162648 162856 2.01 + 0 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Internal 168045 168241 1.64 + 1 sc_iso3_15687_17 sc_iso3_15687 geneid_iso3 Terminal 168704 168990 1.43 + 2 sc_iso3_15687_17 # Gene 18 (Forward). 3 exons. 355 aa. Score = 10.166154 sc_iso3_15687 geneid_iso3 First 169695 169994 1.88 + 0 sc_iso3_15687_18 sc_iso3_15687 geneid_iso3 Internal 170177 170517 5.65 + 0 sc_iso3_15687_18 sc_iso3_15687 geneid_iso3 Terminal 170608 171031 2.63 + 1 sc_iso3_15687_18 # Gene 19 (Reverse). 6 exons. 305 aa. Score = 4.493908 sc_iso3_15687 geneid_iso3 Terminal 171789 171869 -2.60 - 0 sc_iso3_15687_19 sc_iso3_15687 geneid_iso3 Internal 172063 172175 4.16 - 2 sc_iso3_15687_19 sc_iso3_15687 geneid_iso3 Internal 172234 172406 -0.02 - 1 sc_iso3_15687_19 sc_iso3_15687 geneid_iso3 Internal 173046 173115 0.95 - 2 sc_iso3_15687_19 sc_iso3_15687 geneid_iso3 Internal 174662 174976 3.26 - 2 sc_iso3_15687_19 sc_iso3_15687 geneid_iso3 First 176260 176422 -1.25 - 0 sc_iso3_15687_19 # Gene 20 (Forward). 1 exons. 131 aa. Score = 2.434658 sc_iso3_15687 geneid_iso3 Single 177395 177787 2.43 + 0 sc_iso3_15687_20 # Gene 21 (Forward). 2 exons. 171 aa. Score = 5.411416 sc_iso3_15687 geneid_iso3 First 192463 192567 1.92 + 0 sc_iso3_15687_21 sc_iso3_15687 geneid_iso3 Terminal 197182 197589 3.49 + 0 sc_iso3_15687_21 # Gene 22 (Reverse). 4 exons. 172 aa. Score = 2.083323 sc_iso3_15687 geneid_iso3 Terminal 201117 201299 2.12 - 0 sc_iso3_15687_22 sc_iso3_15687 geneid_iso3 Internal 201663 201821 1.53 - 0 sc_iso3_15687_22 sc_iso3_15687 geneid_iso3 Internal 203134 203286 1.26 - 0 sc_iso3_15687_22 sc_iso3_15687 geneid_iso3 First 203508 203528 -2.83 - 0 sc_iso3_15687_22 # Gene 23 (Forward). 3 exons. 216 aa. Score = 8.431024 sc_iso3_15687 geneid_iso3 First 207046 207138 3.85 + 0 sc_iso3_15687_23 sc_iso3_15687 geneid_iso3 Internal 210050 210221 0.41 + 0 sc_iso3_15687_23 sc_iso3_15687 geneid_iso3 Terminal 213639 214021 4.17 + 2 sc_iso3_15687_23 # Gene 24 (Forward). 1 exons. 255 aa. Score = 7.855202 sc_iso3_15687 geneid_iso3 Single 215345 216109 7.86 + 0 sc_iso3_15687_24 # Gene 25 (Reverse). 6 exons. 291 aa. Score = 13.164645 sc_iso3_15687 geneid_iso3 Terminal 217234 217425 0.64 - 0 sc_iso3_15687_25 sc_iso3_15687 geneid_iso3 Internal 217836 218011 5.25 - 2 sc_iso3_15687_25 sc_iso3_15687 geneid_iso3 Internal 218201 218361 4.00 - 1 sc_iso3_15687_25 sc_iso3_15687 geneid_iso3 Internal 230047 230129 1.41 - 0 sc_iso3_15687_25 sc_iso3_15687 geneid_iso3 Internal 233395 233523 1.99 - 0 sc_iso3_15687_25 sc_iso3_15687 geneid_iso3 First 235304 235435 -0.13 - 0 sc_iso3_15687_25 # Gene 26 (Reverse). 5 exons. 325 aa. Score = 9.990945 sc_iso3_15687 geneid_iso3 Terminal 242590 242781 2.11 - 0 sc_iso3_15687_26 sc_iso3_15687 geneid_iso3 Internal 243153 243328 4.21 - 2 sc_iso3_15687_26 sc_iso3_15687 geneid_iso3 Internal 243518 243842 2.27 - 0 sc_iso3_15687_26 sc_iso3_15687 geneid_iso3 Internal 244834 244916 0.70 - 2 sc_iso3_15687_26 sc_iso3_15687 geneid_iso3 First 246460 246658 0.70 - 0 sc_iso3_15687_26 # Gene 27 (Forward). 4 exons. 1314 aa. Score = 93.496075 sc_iso3_15687 geneid_iso3 First 248766 249601 28.39 + 0 sc_iso3_15687_27 sc_iso3_15687 geneid_iso3 Internal 249669 250596 17.33 + 1 sc_iso3_15687_27 sc_iso3_15687 geneid_iso3 Internal 250687 250898 -2.14 + 0 sc_iso3_15687_27 sc_iso3_15687 geneid_iso3 Terminal 251146 253111 49.93 + 1 sc_iso3_15687_27 # Gene 28 (Reverse). 12 exons. 605 aa. Score = 13.631380 sc_iso3_15687 geneid_iso3 Terminal 253685 253828 -0.97 - 0 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 254097 254299 2.54 - 2 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 254804 254976 3.57 - 1 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 255125 255255 1.19 - 0 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 256081 256227 2.42 - 0 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 257414 257518 0.25 - 0 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 258352 258490 -0.37 - 1 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 258707 258898 3.04 - 1 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 259480 259628 1.75 - 0 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 260954 261178 0.28 - 0 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 Internal 267348 267543 0.97 - 1 sc_iso3_15687_28 sc_iso3_15687 geneid_iso3 First 275544 275554 -1.04 - 0 sc_iso3_15687_28 # Gene 29 (Forward). 20 exons. 1692 aa. Score = 100.440108 sc_iso3_15687 geneid_iso3 First 278176 278181 -1.67 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 283703 283914 2.91 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 284069 284318 5.69 + 1 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 284753 284854 3.44 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 284909 285063 3.05 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 285586 286070 13.46 + 1 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 286778 286918 4.52 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 290196 290311 1.41 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 290967 291114 1.07 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 291480 291815 11.83 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 291869 291940 1.92 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 291999 293644 38.08 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 295998 296199 0.99 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 296759 296949 4.97 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 297764 297925 2.41 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 298242 298463 1.22 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 298745 298970 2.16 + 0 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 300088 300165 1.56 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Internal 301216 301360 0.94 + 2 sc_iso3_15687_29 sc_iso3_15687 geneid_iso3 Terminal 301718 301898 0.47 + 1 sc_iso3_15687_29 # Gene 30 (Forward). 2 exons. 170 aa. Score = 2.788422 sc_iso3_15687 geneid_iso3 First 305727 306069 -0.46 + 0 sc_iso3_15687_30 sc_iso3_15687 geneid_iso3 Terminal 312727 312893 3.25 + 2 sc_iso3_15687_30 # Gene 31 (Reverse). 3 exons. 200 aa. Score = 3.586553 sc_iso3_15687 geneid_iso3 Terminal 314021 314308 1.05 - 0 sc_iso3_15687_31 sc_iso3_15687 geneid_iso3 Internal 315378 315506 0.41 - 0 sc_iso3_15687_31 sc_iso3_15687 geneid_iso3 First 315707 315889 2.13 - 0 sc_iso3_15687_31 # Gene 32 (Reverse). 8 exons. 431 aa. Score = 30.205157 sc_iso3_15687 geneid_iso3 Terminal 316457 316645 3.35 - 0 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 316831 317032 5.54 - 1 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 317385 317554 5.35 - 0 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 318013 318201 7.84 - 0 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 318964 319092 0.92 - 0 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 321283 321426 1.17 - 0 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 321801 321923 2.75 - 0 sc_iso3_15687_32 sc_iso3_15687 geneid_iso3 Internal 322075 322221 3.30 - 0 sc_iso3_15687_32