/*
  The Broad Institute
  SOFTWARE COPYRIGHT NOTICE AGREEMENT
  This software and its documentation are copyright (2006) by the
  Broad Institute/Massachusetts Institute of Technology. All rights are
  reserved.

  This software is supplied without any warranty or guaranteed support
  whatsoever. Neither the Broad Institute nor MIT can be responsible for its
  use, misuse, or functionality.
*/

package calhoun.gebo.internal.db;


/**
 * Database specific constants. Moved here from OracleDataManager to
 * 1) remove clutter and 2) AP.WHATEVER is a lot easier to type than
 * OracleDataManager.WHATEVER
 *
 * the ap prefix is never attached here.
 *
 * @author <a href="mailto:reinhard@PC14031"></a>
 */
public class AP {
   
    public static final String MANUAL = "manual";    
    public static final String BLAST_VIEW = "AP_BLAST_VIEW";
    public static final String ANNOTATED_TRANSCRIPT_VIEW = "AP_ANNOTATED_TRANSCRIPT_VIEW";
    public static final String UTR_ELEMENT_VIEW = "AP_UTR_ELEMENT_VIEW";
    public static final String ALIGNMENTSEGMENT_VIEW = "AP_ALIGNMENTSEGMENT_VIEW";
    public static final String PRO_GENE_VIEW_OLD = "AP_GENEVIEW";
    public static final String PRO_GENE_VIEW_NEW = "AP_PGENE_VIEW";    
    public static final String ALT_FEATURE_ID = "ALT_FEATURE_ID";
    public static final String ALT_SEQUENCE_ID = "ALT_SEQUENCE_ID";
    public static final String ALT_START = "ALT_START";
    public static final String ALT_STOP  = "ALT_STOP";
    public static final String ALT_LENGTH = "ALT_LENGTH";
    public static final String ALT_STRAND = "ALT_STRAND";
    public static final String CREATED_BY = "CREATED_BY";
    public static final String CREATION_DATE = "CREATION_DATE";
    public static final String CURATION_FLAG_IDS = "CURATION_FLAG_IDS";
    public static final String FEATURE_ID = "FEATURE_ID";
    public static final String GENE_ACCESSION_NUMBER = "GENE_ACCESSION_NUMBER";
    public static final String GENE_SYMBOL = "SYMBOL";
	public static final String LABEL = "LABEL";
	public static final String LENGTH = "LENGTH";
    public static final String MODIFIED_BY = "MODIFIED_BY";
    public static final String MODIFICATION_DATE = "MODIFICATION_DATE";
    public static final String PARENT_FEATURE_ID = "PARENT_FEATURE_ID";
    public static final String PRIMARY_EVIDENCE_FEATURE_ID = "EVIDENCE_FEATURE_ID";
    public static final String REVIEW_COMMENT = "REVIEW_COMMENT";
    public static final String REVIEW_DATE = "REVIEW_DATE";
    public static final String REVIEWED_BY = "REVIEWED_BY";
	public static final String START = "START";
    public static final String START_CDS = "START_CDS";
    public static final String START_CODON = "START_CODON";
	public static final String STOP  = "STOP";
    public static final String STOP_CDS  = "STOP_CDS";
    public static final String STOP_CODON = "STOP_CODON";
	public static final String STRAND = "STRAND";
    public static final String TRANSCRIPT_ACCESSION_NUMBER = "TRANSCRIPT_ACCESSION_NUMBER";
    public static final String FEATURE_NAME = "NAME";
    public static final String FEATURE_LABEL = "LABEL";
    public static final String RETIREMENT_CODE = "RETIREMENT_CODE";
    public static final String RETIREMENT_COMMENT = "RETIREMENT_COMMENT";
    public static final String TRANSCRIPT_COMMENTS   = "COMMENTS";
    public static final String TRANSCRIPT_ID         = "TRANSCRIPT_FEATURE_ID";
    public static final String TRANSCRIPT_TYPE       = "TRANSCRIPT_TYPE";
    public static final String TRANSCRIPT_TYPE_ID    = "TRANSCRIPT_TYPE_ID";
    public static final String PRIMARY_ACCESSION           = "PRIMARY_ACC";
    public static final String TRANSCRIPT_START      = "TRANSCRIPT_START";
    public static final String TRANSCRIPT_STOP       = "TRANSCRIPT_STOP";

}