/*
  The Broad Institute
  SOFTWARE COPYRIGHT NOTICE AGREEMENT
  This software and its documentation are copyright (2006) by the
  Broad Institute/Massachusetts Institute of Technology. All rights are
  reserved.

  This software is supplied without any warranty or guaranteed support
  whatsoever. Neither the Broad Institute nor MIT can be responsible for its
  use, misuse, or functionality.
*/

package calhoun.gebo.internal.db;

/**
 * <code>SeqPathDomReference</code> is contains all the
 * tag names or attribute name of a SeqPath DOM object.
 * 
 */
public class SeqPathDomReference {
 
 
    public static String SEQPATH = "seqpath";
    public static String SEQPATH_NAME = "seqpathname";
    public static String ORGANISM_NAME = "organismname";
    public static String SEQPATH_CHROMOSOME = "seqpathchromosome";
    public static String SEQPATH_ID  = "seqpathid";
   
    public static String CHROMOSOME =  "chromosome";
    public static String BUILD_DATE  = "builddate";
    public static String STAFF_ID = "staffid";
    public static String SEQPATH_CHROMOSOME_ID = "seqpathchromosomeid";
   
    public static String SEQPATH_REGION = "seqpathregion";
    public static String SEQPATH_COVERAGE_REGION = "seqpathcoverageregion";
    public static String SEQPATH_GAP_REGION = "seqpathgapregion";
    public static String SEQPATH_REGION_ID = "seqpathregionid";
    public static String REGION_NAME = "regionname";
    public static String REGION_POSITION = "regionposition";
    public static String REGION_TYPE = "regiontype";
   
    public static String SEQPATH_COVERAGE = "seqpathcoverage";
    public static String SEQPATH_COVERAGE_ID = "seqpathcoverageid";
    public static String CONTIG_START = "contigstart";
    public static String CONTIG_STOP = "contigstop";
    public static String AGP_START    = "agpstart";
    public static String AGP_STOP = "agpstop";
    public static String RELATIVE_CONTIG_POSITION = "relativecontigposition";
    public static String CLONE_ID = "cloneid";
    public static String PROJECT_ID = "projectid";
    public static String GENBANK_ACCESSION = "genbankaccession";
    public static String IS_DUPLICATE = "isduplicate";

    public static String SEQPATH_GAP = "seqpathgap";
    public static String GAP_START_DATE = "gapstartdate";
    public static String GAP_END_DATE = "gapenddate";
    public static String GAP_TYPE = "gaptype";
    public static String GAP_STATUS = "gapstatus";
    public static String IS_OPEN = "isopen";

    public static String SEQPATH_GAP_SIZE = "seqpathgapsize";
    public static String GAP_SIZE = "gapsize";
    public static String GAP_SIZE_METHOD = "gapsizemethod";
    public static String GAP_SIZE_DATE = "gapsizedate";
    public static String SEQPATH_GAP_SIZE_ID = "seqpathgapsizeid";

    public static String YES = "Y";
    public static String NO = "N";

}