| Number | Motif | Location | # of ORFs | Enriched in Categories |
| 1 | YCGTnnnnmRYGAY | 5' | 796 | ChIP.ABF1.YPD: Bound by ABF1 in YPD (275 ORFs)
EXP.n73.c4: Fuzzy_73_0.04 rESR(many genes involved in protein synthesis (652 ORFs) |
| 2 | RTTACCCGRM | 5' | 865 | ChIP.REB1.YPD: Bound by REB1 in YPD (146 ORFs)
GO.Pro.13: vesicle-mediated transport (164 ORFs) |
| 3 | gcGATGAGmtgaraw | 5' | 269 | EXP.n72.c4: Fuzzy_72_0.04 Secretion (overlaps somewhat with Node 73, rESR) (173 ORFs)
EXP.n74.c4: Fuzzy_74_0.04 Node74 (897 ORFs)
EXP.n90.c4: Fuzzy_90_0.04 Node90 (128 ORFs)
GO.Pro.29: ribosome biogenesis (92 ORFs)
GO.Pro.36: rRNA processing (74 ORFs)
GO.Pro.6: transcription (371ORFs) |
| 4 | TSGGCGGCTAWW | 5' | 245 | GO.Pro.39: meiosis (68 ORFs) |
| 5 | RTCACGTGV | 5' | 337 | ChIP.CBF1.YPD: Bound by CBF1 in YPD (44 ORFs)
ChIP.MET31.YPD: Bound by MET31 in YPD (29 ORFs)
ChIP.MET4.YPD: Bound by MET4 in YPD (27 ORFs)
EXP.n3.c4: Fuzzy_3_0.04 Genes adjacent to Ty elements (82 ORFs)
GO.Pro.81: sulfur metabolism (9 ORFs)
GO.Pro.88: sulfate assimilation (8 ORFs)
GO.Pro.90: sulfur utilization(8 ORFs) |
| 6 | WTATWTACADG | 3' | 522 | EXP.n14.c4: Fuzzy_14_0.04 Mitochondrial proteins (some Mt Ribosomal protein genes) (148 ORFs)
EXP.n15.c4: Fuzzy_15_0.04 Mitochondrial proteins (overlapping clustering with Node 14) (123 ORFs)
EXP.n16.c4: Fuzzy_16_0.04 Node16 (108 ORFs)
GO.Pro.37: mitochondrion organization and biogenesis (70 ORFs)
GO.Pro.8: protein biosynthesis (294 ORFs) |
| 7 | GRRAAAWTTTTCACT | 5' | 221 | EXP.n73.c4: Fuzzy_73_0.04 rESR(many genes involved in protein synthesis (652 ORFs)
EXP.n74.c4: Fuzzy_74_0.04 Node74 (897 ORFs)
GO.Pro.29: ribosome biogenesis (92 ORFs)
GO.Pro.36: rRNA processing (74 ORFs)
GO.Pro.6: transcription (371ORFs) |
| 8 | TTCCnaAttnGGAAA | 5' | 279 | ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.DIG1.14hr: Bound by DIG1 in YPD (38 ORFs)
ChIP.DIG1.90min: Bound by DIG1 in YPD (38 ORFs)
ChIP.FKH2.YPD: Bound by FKH2 in YPD (108 ORFs)
ChIP.MCM1.Alpha: Bound by MCM1 in YPD (88 ORFs)
ChIP.MCM1.YPD: Bound by MCM1 in YPD (88 ORFs)
ChIP.NDD1.YPD: Bound by NDD1 in YPD (97 ORFs)
ChIP.STE12.14hr: Bound by STE12 in YPD (56 ORFs)
ChIP.STE12.90min: Bound by STE12 in YPD (56 ORFs)
ChIP.STE12.Alpha: Bound by STE12 in YPD (56 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
EXP.n86.c4: Fuzzy_86_0.04 Histones (85 ORFs) |
| 9 | CGTTTCTTTTTCY | 5' | 291 | ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs) |
| 10 | TYYTCGAGA | 5' | 473 | |
| 11 | TTTTCGCG | 5' | 321 | ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.DIG1.14hr: Bound by DIG1 in YPD (38 ORFs)
ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)
ChIP.STB1.YPD: Bound by STB1 in YPD (23 ORFs)
ChIP.STE12.14hr: Bound by STE12 in YPD (56 ORFs)
ChIP.STE12.90min: Bound by STE12 in YPD (56 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs) |
| 12 | TKACGCGTT | 5' | 296 | ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
GO.Pro.28: DNA repair (97 ORFs)
GO.Pro.31: DNA replication (80 ORFs) |
| 13 | STGCGGnnnttTCTnnG | 5' | 146 | ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)
ChIP.PHD1.90min: Bound by PHD1 in YPD (91 ORFs)
ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs)
ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs) |
| 14 | YCTATTGTT | 5' | 561 | |
| 15 | TTTTGCCACCG | 5' | 146 | EXP.n10.c4: Fuzzy_10_0.04 Protein degradation (overlapping cluster with Node 9) (54 ORFs)
EXP.n11.c4: Fuzzy_11_0.04 Protein folding chaperones (86 ORFs)
EXP.n69.c4: Fuzzy_69_0.04 Node69 (145 ORFs)
GO.Pro.19: proteolysis and peptidolysis (128 ORFs) |
| 16 | tTTGTTTACnTTT | 5' | 354 | ChIP.ACE2.Cu2: Bound by ACE2 in YPD (72 ORFs)
ChIP.FKH1.YPD: Bound by FKH1 in YPD (61 ORFs)
ChIP.FKH2.YPD: Bound by FKH2 in YPD (108 ORFs)
ChIP.MCM1.Alpha: Bound by MCM1 in YPD (88 ORFs)
ChIP.MCM1.YPD: Bound by MCM1 in YPD (88 ORFs)
ChIP.NDD1.YPD: Bound by NDD1 in YPD (97 ORFs)
EXP.n83.c4: Fuzzy_83_0.04 Cellcycle genes (maybe) (108 ORFs)
GO.Pro.26: mitosis (101 ORFs) |
| 17 | RVACCCTD | 5' | 175 | |
| 18 | WCGCGTCGCGt | 5' | 110 | ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs) |
| 19 | GGGTnACCC | 5' | 221 | |
| 20 | GnnATGTGTGGGTGT | 5' | 65 | ChIP.FHL1.YPD: Bound by FHL1 in YPD (194 ORFs) |
| 21 | TTTTGTGTCRC | 5' | 236 | ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs)
EXP.n22.c4: Fuzzy_22_0.04 Node22 (133 ORFs) |
| 22 | TTTCAnCGCGC | 5' | 182 | |
| 23 | TATTAWTATTATtMtnatta | 3' | 159 | |
| 24 | SCGnHGGS | 5' | 161 | |
| 25 | ACAGCCGCRY | 5' | 156 | |
| 26 | DCGCGGGGH | 5' | 285 | ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs) |
| 27 | SKGTGGSGc | 5' | 114 | |
| 28 | TTTTn(19)GCKCG | 5' | 224 | ChIP.GAL4.Raffi: Bound by GAL4 in YPD (40 ORFs) |
| 29 | hRCCCYTWDt | 5' | 442 | |
| 30 | TKCCCnnnnGGG | 5' | 256 | ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs) |
| 31 | GTGTCAGTAAt | 5' | 154 | ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs) |
| 32 | RGTTTTTCCG | 5' | 283 | ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)
ChIP.RGT1.Low G: Bound by RGT1 in YPD (2 ORFs) |
| 33 | TTCTMGAAGA | 5' | 253 | ChIP.HSF1.YPD: Bound by HSF1 in YPD (55 ORFs)
ChIP.MSN2.Acid: Bound by MSN2 in YPD (1 ORFs)
EXP.n12.c4: Fuzzy_12_0.04 Protein folding chaperones (overlapping group with Node 11) (18 ORFs)
EXP.n13.c4: Fuzzy_13_0.04 Node13 (50 ORFs)
GO.Pro.48: protein folding (43 ORFs) |
| 34 | YCCGSGGS | 5' | 92 | ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs) |
| 35 | CnCCTTTTATAC | 5' | 124 | |
| 36 | CCSGTAnCGG | 5' | 110 | ChIP.LEU3.YPD: Bound by LEU3 in YPD (22 ORFs) |
| 37 | SKTKCCTT | 5' | 175 | ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs) |
| 38 | CTCCCCTTAT | 5' | 218 | EXP.n8.c4: Fuzzy_8_0.04 iESR (638 ORFs) |
| 39 | GCCCGG | 5' | 152 | tRNA.UP: Upstream of a tRNA (282 ORFs) |
| 40 | SGCGCGRB | 5' | 113 | |
| 41 | CTCSGCS | 5' | 77 | |
| 42 | TGnKAGCGCCG | 5' | 72 | |
| 43 | ATGACTCWT | 5' | 281 | ChIP.GCN4.3AT: Bound by GCN4 in YPD (80 ORFs)
ChIP.GCN4.YPD: Bound by GCN4 in YPD (80 ORFs)
ChIP.RTG3.Rapam: Bound by RTG3 in YPD (16 ORFs)
EXP.n3.c4: Fuzzy_3_0.04 Genes adjacent to Ty elements (82 ORFs)
EXP.n81.c4: Fuzzy_81_0.04 Lysine biosynthesis (37 ORFs)
EXP.n82.c4: Fuzzy_82_0.04 G2/Mgenes (52 ORFs)
GO.Pro.120: Not yet annotated (607 ORFs)
GO.Pro.27: amino acid metabolism (98 ORFs)
GO.Pro.43: amino acid biosynthesis (61 ORFs) |
| 44 | CCGAnnnTCGG | 5' | 76 | EXP.n46.c4: Fuzzy_46_0.04 Major facilitator genes (192 ORFs) |
| 45 | SCGMnnnnnnKCG | 5' | 59 | |
| 46 | CnCCGCGCnnTTTs | 5' | 184 | |
| 47 | TTTTnnnnnnnnnnnngGGGT | 5' | 359 | |
| 48 | TGTRnCAW | 3' | 155 | |
| 49 | YCSknnnnnnnnnKCGG | 5' | 90 | |
| 50 | CGGnnnnnnnnnnnnnKCGV | 5' | 52 | |
| 51 | WGTGACg | 5' | 202 | ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs) |
| 52 | RTCCCTV | 5' | 96 | |
| 53 | YTCGTTTAGG | 5' | 141 | EXP.n89.c4: Fuzzy_89_0.04 Node89 (90 ORFs)
GO.Pro.21: lipid metabolism (116 ORFs) |
| 54 | TYCGKRM | 5' | 309 | |
| 55 | CGCnnnnnnnnnnnnnnBCGB | 5' | 76 | |
| 56 | TWCCCCM | 5' | 95 | |
| 57 | CGGCnnMGnnnnnnnCGC | 5' | 84 | tRNA.UP: Upstream of a tRNA (282 ORFs) |
| 58 | CCGSnnnnnGVC | 5' | 69 | |
| 59 | tRTAMATAKWT | 3' | 634 | |
| 60 | TtTATAnTATATAnA | 3' | 239 | |
| 61 | GKBAGGGT | 5' | 363 | |
| 62 | GCnnTTAnCGG | 5' | 209 | |
| 63 | GGCSnnnnnGnnnCGCG | 5' | 80 | tRNA.UP: Upstream of a tRNA (282 ORFs) |
| 64 | TTCTCnnnnnnnCGC | 5' | 292 | ChIP.PHD1.90min: Bound by PHD1 in YPD (91 ORFs)
ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs) |
| 65 | SCGKnnnnKCGD | 5' | 73 | |
| 66 | AATATTCTT | 3' | 437 | |
| 67 | CGCGTnnnnnnnnACG | 5' | 151 | ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs) |
| 68 | CCGHVGGM | 5' | 57 | |
| 69 | CGCG=TTTT | 5' | 212 | |
| 70 | CGCGnnnnnGGGS | 5' | 156 | |
| 71 | cTGCAGGGR | 5' | 264 | ChIP.SKN7.YPD: Bound by SKN7 in YPD (105 ORFs) |
