Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
C. albicans WO1 N/A 14.42 Mb 14.36 Mb 16 1.77 Mb 85 537.13 Kb 96.61
C. albicans SC5314 N/A 14.3 Mb 14.3 Mb 8 2.23 Mb 8 2.23 Mb -
C. guilliermondii N/A 10.61 Mb 10.57 Mb 9 1.7 Mb 71 313.22 Kb 98.98
C. lusitaniae N/A 12.11 Mb 12.08 Mb 9 1.87 Mb 88 266.61 Kb 99.09
C. parapsilosis N/A 13.09 Mb 13.09 Mb 143 160.35 Kb 143 160.35 Kb -
C. tropicalis N/A 14.58 Mb 14.53 Mb 23 1.65 Mb 127 221.1 Kb 98.02
D. hansenii N/A 12.22 Mb 12.22 Mb 7 2.04 Mb 7 2.04 Mb -
L. elongisporus N/A 15.51 Mb 15.43 Mb 27 2.01 Mb 144 261.14 Kb 96.51

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid
C. albicans WO1 1,300 1,200
C. guilliermondii 52 N/A
C. lusitaniae 250 9,253
C. parapsilosis 452 N/A
L. elongisporus 112 --

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome