What's New?
3/22/2006 Release of Gene set version 1.0
For a description of this gene set, see gene finding report.
This release of gene set includes:
- A predicted protein gene set (13,544 genes).
- BLAST databases for the entire assembly, as well as individal gene and protein predictions
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers (Augustus, GeneZilla, and SNAP)
- tRNA predictions
- Search and visualizations for all the features
- Search and download a particular region of the genome assembly
- Downloads of the consensus sequence and additional files for the genome assembly and gene predictions
July 16, 2003 The initial release of our 10X sequence assembly of the Coprinus cinereus assembly.
The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the project accession AACS00000000. The version described in this release is the first version, AACS01000000.
This initial release allows:
- BLAST searches against our 10X genome assembly
- Downloads of the consensus sequence of our 10X coverage assembly
- Search and download a particular region of the genome assembly
- Download reads from large insert clones (Fosmids) in the 10X genome assembly
There will be a second upcoming release containing the annotation of predicted genes and other genomic features.
Assembly Data
June 25, 2003 Assembly 1
Sequencing Facts
- Greater than 10X sequencing coverage of the genome
- 431 contigs longer than 2 kb
- 106 supercontigs
- 84 kb average contig length (range 2-1122 kb)
- 342 kb average supercontig length (range 2-4142 kb)
- 36 Mb total length of combined contigs (36,254,774 bp)
- Average base lies in a contig of length 218 kb
- Average base lies within a supercontig of length 2.1 Mb
