Genome Statistics

Genome Coverage

Coding DNA as % of Total:49.6
Genic DNA as % of Total:56.2
Gene Density:1 Gene per 3100.8 bp

Feature Statistics [ Download tab delimited ]

CONTIG EXON GENE CODING NONGENIC INTRON NONCODING
count 511 37535 11640 11640 12141 25895 38035
total 36093143 17894807 20298161 17894807 15794982 2403354 18198336
coverage 100.0 49.6 56.2 49.6 43.8 6.7 50.4
gcp 48.3% 51.5% 50.6% 51.5% 45.5% 43.4% 45.2%
min 2014 1 70 36 1 29 1
max 494197 23314 36816 36000 17961 1271 17961
median 41545 242 1450 1272 818 56 80
mean 70632 477 1744 1537 1301 93 478

Features by Length [ Download tab delimited ]

Genes By Intron Count [ Download tab delimited ]

Average Positions of Introns within Genes [ Download tab delimited ]

Introns By Start Position [ Download tab delimited ]

Codon Usage [ Download tab delimited ] | [ Download codon usage by gene, tab delimited ]

Codon Amino Acid Count Usage
* * 5965186 100.00%
AAA K 87928 1.47%
AAC N 152876 2.56%
AAG K 217891 3.65%
AAT N 78026 1.31%
ACA T 102009 1.71%
ACC T 106710 1.79%
ACG T 56085 0.94%
ACT T 98474 1.65%
AGA R 54881 0.92%
AGC S 90561 1.52%
AGG R 37362 0.63%
AGT S 60554 1.02%
ATA I 38604 0.65%
ATC I 157462 2.64%
ATG M 135379 2.27%
ATT I 108591 1.82%
CAA Q 111636 1.87%
CAC H 75715 1.27%
CAG Q 128871 2.16%
CAT H 65995 1.11%
CCA P 86643 1.45%
CCC P 97511 1.63%
CCG P 46170 0.77%
CCT P 119629 2.01%
CGA R 82548 1.38%
CGC R 77101 1.29%
CGG R 30264 0.51%
CGT R 60733 1.02%
CTA L 49230 0.83%
CTC L 142668 2.39%
CTG L 92200 1.55%
CTT L 121510 2.04%
GAA E 152823 2.56%
GAC D 178969 3.00%
GAG E 217104 3.64%
GAT D 175138 2.94%
GCA A 105303 1.77%
GCC A 153713 2.58%
GCG A 67784 1.14%
GCT A 163197 2.74%
GGA G 99284 1.66%
GGC G 135883 2.28%
GGG G 38918 0.65%
GGT G 125221 2.10%
GTA V 40665 0.68%
GTC V 141584 2.37%
GTG V 68411 1.15%
GTT V 114111 1.91%
TAA $ 4317 0.07%
TAC Y 102964 1.73%
TAG $ 3639 0.06%
TAT Y 63762 1.07%
TCA S 84131 1.41%
TCC S 82479 1.38%
TCG S 65256 1.09%
TCT S 102076 1.71%
TGA $ 3684 0.06%
TGC C 44684 0.75%
TGG W 90326 1.51%
TGT C 31926 0.54%
TTA L 26482 0.44%
TTC F 131277 2.20%
TTG L 85197 1.43%
TTT F 93061 1.56%