Genetic, Physical, and Optical Maps

Optical, Physical and Genetic Maps
Gale & Kistler - chromosome 1
Gale & Kistler - chromosome 2
Gale & Kistler - chromosome 3
Gale & Kistler - chromosome 4
Gale & Kistler - Poster
Jurgenson - Linkage Group 1,9
Jurgenson - Linkage Group 2
Jurgenson - Linkage Group 3
Jurgenson - Linkage Group 4,5,6
Jurgenson - Linkage Group 8
Jurgenson - Poster
Two separate projects have created genetic maps for Fusarium and both have been independently integrated with our assembly:
  • Gale and Kistler: genetic map created from 162 sequenced markers (same Fusarium strain as sequenced), anchoring 99.6% of the assembly.
  • James Jurgenson: genetic map created from 52 sequenced markers (cross between Japanese and Kansas strains), anchoring 99% of the assembly.
See Genetic Map Description for more details.

Contigs and supercontigs have been anchored to each genetic map by locating the position of genetic marker sequence within the current assembly using BLASTN (expect < 1e-10).