What's New?

9/13/2006    NCBI annotation submissions for Pseudomonas aeruginosa genomes

The annotations for the following strains have been submitted to GenBank:

Strain Name GenBank Accession Submission Date
P. aeruginosa 2192 AAKW01000000 9/13/06
P. aeruginosa C3719 AAKV01000000 9/13/06

09/13/06   

The initial release of automated gene annotation for the Pseudomonas aeruginosa C3719 strain. The annotation includes 5,586 protein-coding genes, rRNA, and tRNA. To review the methodology behind the gene finding, please view the gene finding report. An overview of the genome and its coding regions is available here.

09/13/06   

The initial release of automated gene annotation for the Pseudomonas aeruginosa 2192 strain. The annotation includes 6,197 protein-coding genes, rRNA, and tRNA. To review the methodology behind the gene finding, please view the gene finding report. An overview of the genome and its coding regions is available here.

11/20/2005   

The initial release of our 9.5 (8.0 Q>20)X sequence assembly of the Pseudomonas aeruginosa C3719 strain. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. More information about the assembly for this particular strain can be found here.

11/20/2005   

The initial release of our 9.5 (8.0 Q>20)X sequence assembly of the Pseudomonas aeruginosa 2192 strain. The sequence traces from the Broad Institute sequencing can be downloaded from the NCBI trace repository. More information about the assembly for this particular strain can be found here.

Assembly Data

10/5/05    Assembly Results P. aeruginosa C3719

  • 9.5X(8X,Q>20)X sequencing coverage of the genome
  • 82 contigs in 1 supercontigs (scaffolds)
  • 83.2 Kb average contig length (range 2.1 - 398.7 Kb)
  • 6.9 Mb average supercontig length (range 6.9 - 6.9 Mb)
  • 6.8 Mb total length of combined contigs (6,826,253 bp)
  • Average base lies in a contig of length 174.7 Kb
  • Average base lies within a supercontig of length 6.9 Mb

10/5/2005    Assembly Results P. aeruginosa 2192

Assembly results: Assembly 1, 10/5/2005

  • 9.5X(8X,Q>20)X sequencing coverage of the genome
  • 82 contigs in 1 supercontigs (scaffolds)
  • 83.2 Kb average contig length (range 2.1 - 398.7 Kb)
  • 6.9 Mb average supercontig length (range 6.9 - 6.9 Mb)
  • 6.8 Mb total length of combined contigs (6,826,253 bp)
  • Average base lies in a contig of length 174.7 Kb
  • Average base lies within a supercontig of length 6.9 Mb