Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
S. sp. Mg1 11.9X (10.13X Q>20) 7.26 Mb 7.11 Mb 127 103.66 Kb 466 25.08 Kb 95.44
S. sp. SPB74 14.6X (12.53X Q>20) 5.29 Mb 5.06 Mb 113 80.34 Kb 534 14.26 Kb 92.45
S. clavuligerus ATCC 27064 11.3X (9.8X Q>20) 6.94 Mb 6.73 Mb 158 80.84 Kb 597 16.89 Kb 93.96
S. pristinaespiralis ATCC 25486 11.3X (9.52X Q>20) 6.37 Mb 6.15 Mb 122 84.3 Kb 532 18.29 Kb 93.58
S. sviceus ATCC 29083 9.08X (7.95X Q>20) 8.64 Mb 8.47 Mb 105 121.43 Kb 522 28.52 Kb 95.88

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome