News
6/18/2008 Release of our annotation of 5 strains of Streptomyces
Strain Name Total Genes Accession Submission Date Streptomyces sp. Mg1 6,975 ABJF01000000 6/18/2008 Streptomyces sp. SPB74 4,935 ABJG01000000 6/18/2008 S. clavuligerus ATCC 27064 6,448 ABJH01000000 6/18/2008 S. pristinaespiralis ATCC 25486 5,753 AARR01000000 6/18/2008 S. sviceus ATCC 29083 8,265 ABJJ01000000 6/18/2008 This annotated release presents:
- Protein and nucleotide BLAST databases
- Precomputed results of BlastX and HMMer Analyses
- Alternative proteins predicted by various gene callers (GeneMark, Glimmer3)
- tRNA predictions
- RFam features
A full summary can be found here.
2/25/2008 The initial release of our assemblies of 5 strains of Streptomyces
The assembled sequences for the following strains have been deposited at DDBJ/EMBL/GenBank:
Strain Name Coverage Accession Submission Date Streptomyces sp. Mg1 12X ABJF01000000 2/20/2008 Streptomyces sp. SPB74 14X ABJG01000000 2/20/2008 S. clavuligerus ATCC 27064 11x ABJH01000000 2/20/2008 S. pristinaespiralis ATCC 25486 11x AARR01000000 2/20/2008 S. sviceus ATCC 29083 9x ABJJ01000000 2/20/2008 The sequence data from the Broad Institute sequencing can be downloaded here and from NCBI.
This initial release allows:
- BLAST searches against our genome assemblies
- Downloads of the consensus sequence and additional files for the genome assembly
- Search and download a particular region of the genome assembly