Data Sets

GenePattern Tutorial	Datasets and files used in the GenePattern Tutorial
gp_tutorial_files.tar.gz	Tutorial files (gzip format)
ALL/AML	Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Golub and Slonim et al., 1999
all_aml.tar.gz	All files (gzip)
all_aml_train.gct	Training data set
all_aml_train.res	Training data set
all_aml_train.cls	Training class vector
all_aml_test.gct	Test data set
all_aml_test.res	Test data set
all_aml_test.cls	Test class vector
Golub_et_al_1999.R	Methodology (R script)
Lymphoma Outcome Prediction	Diffuse Large B-Cell Lymphoma Outcome Prediction by Gene Expression Profiling and Supervised Machine Learning Shipp et al., 2002
dlbcl.tar.gz	All files (gzip)
dlbcl_vs_fscc.res	DLBCL vs. FL morphology data set
dlbcl_vs_fscc.cls	DLBCL vs. FL morphology class vector
dlbcl_outcome.res	DLBCL outcome data set
dlbcl_outcome.res	DLBCL outcome class vector
Global Cancer Map	Multi-Class Cancer Diagnosis Using Tumor Gene Expression Signatures Ramaswamy et al., 2001
GCM.tar.gz	All files (gzip)
GCM_Total.res	Complete data set
GCM_Total.cls	Class vector for complete set
GCM_Normal.res	Normal samples
GISTIC	Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma Beroukhim et al., 2007
GISTIC_Hind_subset.zip	Affymetrix 250K Hind chip files (12 of 187 samples, 166MB)
sample_info_subset.txt	Sample information file