SNP Map Table: C3H/HeJ v.s. C57BL/6J

Unassigned SNPs are included in the FTP tables

Chromosome
GenDist(avg)
FragmentSourceGenDist
SnpPosGt:C3H/HeJGt:C57BL/6J
Chr1
5.5 P
36.MMHAP69FLD6.seqrandom6.6 P to 4.4 P
94GA
8.7 F
12.MMHAP31FLD3.seqrandom8.7 P to 8.7 F
79TC
17.5 F
05.MMHAP9FLB2.seqrandom17.5 F
108TC
25.5124 F
46.MMHAP82FLH4.seqrandom25.1 F to 25.9248 F
70CT
32.8 F
28.MMHAP86FRB10.seqrandom32.8 F
119GT
33.9 F
18.MMHAP46FRF9.seqrandom33.9 F
34CA
34.2306 F
29.MMHAP15FLB5.seqrandom34.2306 F
23CT
37.2 F
L23637est37.2 F
54CT
49.75 F
31.MMHAP17FRC10.seqrandom49.2 P to 50.3 F
148GA
165GC
MHAa21c3.seqrandom49.2 P to 50.3 F
72CA
54.6 F
41.MMHAP6FLF5.seqrandom54.6 F
123AG
57.9 F
19.MMHAP66FLG1.seqrandom57.9 F
66AG
MHAa27a6.seqrandom57.9 F
67CT
64.5 F
02.MMHAP35FRA8.seqrandom64.5 F
38TA
103CT
67.8 F
D1Mit421.1genetic marker67.8 F
129GC
69.1245 F
MHAa67e10.seqrandom70.449 F to 67.8 F
130TG
173AG
69.9 F
28.MHAa65T_M13Rev.seqrandom69.9 F
131GA
74.3 F
D19405est73.2 F to 75.4 F
38GA
82.0 F
D1Mit424.1genetic marker82.0 F
24AG
91.75515 F
12.MMHAP37FRD9.seqrandom91.7103 P to 91.8 F
21GA
93GA
121AG
91.8 F
24.MMHAP87FRH9.seqrandom91.8 F
70GA
31.MMHAP57FLC4.seqrandom91.8 F
61AG
X04648est91.8 F
75AC
90GA
91.8 P
D1Mit455.1genetic marker91.8 P
32CT
120GA
194CT
94.0 F
X92969est94.0 F
36TC
50AG
91CT
94.0 P
D1Mit540.1genetic marker94.0 P
54AG
Chr2
7.7 P
U22339est7.7 P
140GC
27.3 F
32.MMHAP4FLC5.seqrandom27.3 P to 27.3 F
98CA
31.7 F
41.MMHAP45FRF11.seqrandom31.7 F
137TC
32.8 P
31.MMHAP64FRC10.seqrandom32.8 P
43CT
48.65 F
Z17804est49.2 P to 48.1 F
55CT
50.3 F
33.MMHAP63FLC6.seqrandom50.3 F
52AG
D43796est50.3 F
115AG
50.3 P
Results_ER_9_5_95_41.seqrandom50.3 P
170GA
51.4 F
01.MMHAP26FRA7.seqrandom50.3 P to 52.5 F
68AT
01.MMHAP6FLA1.seqrandom51.4 F
119AG
51.95 F
D38218est52.5 P to 51.4 F
38TC
52.5 F
44.MMHAP79FLG5.seqrandom52.5 P to 52.5 F
164AG
54.6 F
M87276est54.6 F to 54.6 P
27GA
55.7 F
38.MMHAP33FRE11.seqrandom55.7 F
54CT
59.0 F
11.MMHAP44FRD8.seqrandom59.0 F
28AG
11.MMHAP87FRD8.seqrandom59.0 F
40GA
50TC
27.MMHAP25FLA6.seqrandom59.0 F
131CT
59.55 F
X80169est59.0 F to 60.1 F
81CT
60.1 F
D2Mit399.1genetic marker60.1 F
39CT
61.2 F
X01450est61.2 F
118TA
72.1 F
D2Mit284.4genetic marker72.1 F
59TC
73.2 F
17.MMHAP71FRF8.seqrandom73.2 F
30CT
77CT
79AG
112GA
78.15 F
26.MHAa77c2.seqrandom77.6 F to 78.7 F
42AG
78.7 F
36.MHAa91g12.seqrandom78.7 F
90CT
98.4 F
24.MMHAP91FLH3.seqrandom98.4 F
49CT
U09421est98.4 F
60AG
101CT
Chr3
9.679 P
11.MMHAP26FRD8.seqrandom9.679 P
99TC
125TG
L11316est9.679 P
158GA
15.3 F
Results_ER_8_28_95_2_4.seqrandom15.3 F
30CT
47AG
25.1 P
D3Mit52.2genetic marker25.1 P
65AG
40.4 F
11.MMHAP11FLD2.seqrandom40.4 F
62GA
34.MMHAP22FRD10.seqrandom40.4 F
109CT
42.6 F
X92122est42.6 P to 42.6 F
49AG
49.2 F
M63961est49.2 F
46GA
50.85 F
MHAa82d4.seqrandom51.4 F to 50.3 P
115CG
54.6 F
X61434est54.6 F
129CT
64.5 P
D3Mit323.1genetic marker64.5 P
19TA
Chr4
3.3 F
X61397est3.3 F
124GA
10.9 F
MHAa38d1.seqrandom10.9 F
133TC
47.55 F
01.MMHAP71FRA7.seqrandom47.0 F to 48.1 F
111CT
54.6 F
18.MMHAP82FLF3.seqrandom54.6 F
70TA
32.MMHAP11FLC5.seqrandom54.6 F
94AG
38.MMHAP34FLE5.seqrandom54.6 F
22AC
54TA
59.55 F
X61399est59.0 P to 60.1 F
110CT
60.1 F
D4Mit203.2genetic marker60.1 F
38AG
61.2 F
U51112est61.2 F
52TC
62.3 F
D4Mit339.2genetic marker62.3 F
87CT
124AG
140CT
Chr5
0.0 F
MHAa7d3.seqrandom0.0 F
39TA
112TG
131TA
3.85 F
29.MMHAP35FLB5.seqrandom3.3 F to 4.4 F
155GA
5.5 F
36.MMHAP17FRD12.seqrandom5.5 F
85AC
14.2 F
MHAa54a9.seqrandom14.2 F
88AG
16.95 F
MHAa87h2.seqrandom16.4 F to 17.5 F
123CA
18.6 F
MHAa52c2.seqrandom18.6 F
100AG
121AG
25.1 F
33.MMHAP28FLC6.seqrandom25.1 F
122CT
25.65 F
MHAa35a12.seqrandom25.1 F to 26.2 F
126TC
27.3 F
D43963est27.3 F
80CT
160GA
32.8 P
M86829est32.8 P
60TC
128AG
37.75 F
L23801est37.2 P to 38.3 F
135TG
40.4 F
12.MMHAP17FRD9.seqrandom40.4 F
23TC
49.23689 P
mHAa21e7.seqrandom54.77378 P to 43.7 P
154GA
59.3702 F
16.MMHAP36FRF7.seqrandom57.9 F to 60.8404 F
20GA
112CT
74.3 F
22.MMHAP91FLH1.seqrandom74.3 F
28GA
Chr6
3.3 F
MHAa74g5.seqrandom3.3 F
79TG
3.3 P
03.MMHAP86FRA9.seqrandom3.3 P
38AC
6.6 F
MHAa75g2.seqrandom6.6 F
42TC
114GA
133AC
7.7 F
32.MHAa55g8.seqrandom7.7 F
133TA
12.0 P
U20371est12.0 P
136GT
16.4 F
46.MMHAP28FRH10.seqrandom16.4 F
102CT
18.6 F
29.MHAa92c5.seqrandom18.6 F
21TC
36TA
32.MMHAP88FLC5.seqrandom18.6 F
49GA
31.7 P
D6Mit365.3genetic marker31.7 P
48TA
40.4 P
X99043est40.4 P
24CT
42.6 F
44.MMHAP85FLG5.seqrandom41.5 F to 43.7 F
54GC
43.7 P
30.MMHAP25FRB12.seqrandom43.7 P
38AT
138AG
44.MMHAP27FRG11.seqrandom43.7 P
122TC
123TC
45.9 P
15.MHAa10f3.seqrandom45.9 P
90CT
47.0 F
28.MMHAP6FRB10.seqrandom47.0 F
62TC
118AC
30.MMHAP30FLB6.seqrandom47.0 F
131CT
32.MMHAP4FRC11.seqrandom47.0 F
119CT
51.4 P
D6Mit13genetic marker51.4 P
118GA
D6Mit337.3genetic marker51.4 P
81CT
62.85 F
37.MMHAP17FRE10.seqrandom62.3 F to 63.4 F
89GA
45.MMHAP94FRG12.seqrandom62.3 F to 63.4 F
21AG
60TC
83TG
63.4 F
03.MMHAP54FRA9.seqrandom63.4 F to 63.4 P
52TG
35.MMHAP94FLD5.seqrandom63.4 F to 63.4 P
104TC
65.05 F
MHAa52a5.seqrandom63.4 P to 66.7 F
36TC
110TC
65.6 P
D6Mit201.2genetic marker65.6 P
67AG
66.7 F
12.MMHAP34FLD3.seqrandom66.7 F
35GA
M23236est66.7 F to Tel
98AT
Chr7
22.45 F
MHAa34e4.seqrandom21.9 F to 23.0 F
35GT
26.2 F
12.MMHAP70FRD9.seqrandom26.2 F
44TC
80GC
29.5 F
36.MHAa92g12.seqrandom29.5 F
72AC
30.6 F
D63644est30.6 F
60TC
R74768est30.6 F
34TC
Results_ER_8_28_95_1___169.seqrandom30.6 F
23TG
48GA
33.9 F
13.MHAa56f1.seqrandom33.9 F
66CT
21.MMHAP61FLG3.seqrandom33.9 F
84GA
35.0 P
MHAa54h10.seqrandom35.0 P
57AG
37.2 F
26.MMHAP94FLA5.seqrandom37.2 F
55CT
63GA
75AG
40.95 F
41.MMHAP64FLF5.seqrandom39.3 F to 42.6 F
22GA
91CT
41.5 F
17.MMHAP44FLF2.seqrandom41.5 F
26CT
61AC
42.6 F
D18377est42.6 F
69GC
130TC
43.7 P
22.MMHAP75FRH7.seqrandom43.7 P
54GA
Chr8
4.4 F
44.MMHAP30FLG5.seqrandom4.4 F
75GA
82AC
101CT
17.1619 F
14.MMHAP27FRE8.seqrandom18.6 F to 15.7238 F
21CG
46AG
99GA
122CG
23.0 F
38.MMHAP16FLE5.seqrandom23.0 F
139TC
35 F
24.MMHAP34FLH3.seqrandom35.0 F to 35.0 P
79CG
35.0 F
34.MMHAP86FLD4.seqrandom35.0 F
75CT
D8Mit145.1genetic marker35.0 F
45AG
X76654est35.0 F
37GA
36.1 F
M23529est36.1 F
127CG
38.8 P
13.MMHAP80FLE1.seqrandom38.3 P to 39.3 P
26AC
39.3 F
15.MMHAP82FLE3.seqrandom39.3 F
117TC
Z49987est39.3 F
38CT
42.6 F
20.MMHAP88FRG8.seqrandom42.6 P to 42.6 F
56CG
122CA
154CA
44.8 F
36.MMHAP61FRD12.seqrandom44.8 F
31CT
73.75 F
14.MMHAP71FRE8.seqrandom73.2 F to 74.3 F
46GT
Chr9
4.4 P
19.MMHAP29FRG7.seqrandom4.4 P
31GA
12.0 F
26.MMHAP84FRA11.seqrandom12.0 F
59CG
132AG
13.1 F
28.MMHAP56FRB10.seqrandom13.1 F
76GA
147AG
17.5 F
D9Mit286.1genetic marker17.5 F
44GA
60GA
17.5 P
11_27_36iis.seqrandom17.5 P
53AC
22.45 F
45.MMHAP28FLG6.seqrandom21.9 F to 23.0 P
128TC
33.9 P
D9Mit233.1genetic marker33.9 P
28AG
43.7 F
D9Mit211.1genetic marker43.7 F
38TG
X60367est43.7 F
111AT
124TC
53.6 F
R74805est53.6 F
27CT
56.8 P
32.MMHAP63FLC5.seqrandom56.8 P
97TC
57.9 F
01.MMHAP90FRA7.seqrandom57.9 F
33TC
96CT
57.9 P
D9Mit14.1genetic marker57.9 P
25AG
42AG
119CA
142AG
60.1 F
D17914est60.1 F
31GA
61.2 F
D9Mit278.2genetic marker61.2 F
26GA
Chr10
2.2 F
21.MMHAP91FLG3.seqrandom2.2 F
114AG
47.MMHAP7FRH11.seqrandom2.2 F
155CT
3.3 F
D10Mit1.1genetic marker3.3 F
84CT
5.5 F
21.MMHAP26FLG3.seqrandom5.5 F to 5.5 P
31CT
42AG
68GA
16.4 F
D10Mit126.1genetic marker16.4 F
23AG
L10106est16.4 F
140AG
21.9 F
38.MMHAP75FRE11.seqrandom21.9 F to 21.9 P
35CT
41.5 F
R75378est41.5 F
22TG
63.4 P
D16333est63.4 P
39TC
Chr11
2.2 F
09.MMHAP48FLC3.seqrandom2.2 F
100CA
4.4 F
02.MMHAP90FLA2.seqrandom4.4 F
31GT
58TC
9.8 F
03.MMHAP34FRA9.seqrandom9.8 F
20TC
34CT
32.MMHAP26FRC11.seqrandom9.8 F
143CT
10.9 F
Results_ER_9_1_95_3_31.seqrandom10.9 F
137TC
12 F
MHAa67b4.seqrandom10.9 F to 13.1 F
46TC
13.1 F
46.MMHAP86FRH10.seqrandom13.1 F
20CT
19.7 F
32.MMHAP9FLC5.seqrandom19.7 F
53GA
120AG
136AG
25.1 P
D11Mit310.1genetic marker25.1 P
44CA
26.75 F
15.MMHAP89FLE3.seqrandom26.2 P to 27.3 F
120GA
27.3 F
24.MMHAP48FLH3.seqrandom27.3 F
47GC
101GA
29.5 F
21.MMHAP66FLG3.seqrandom29.5 F
68TC
U21226est29.5 F
66AT
117GA
30.6 F
06.MMHAP36FRB9.seqrandom29.5 F to 31.7 F
20AG
75GA
165GT
31.7 F
06.MMHAP23FLB3.seqrandom31.7 F
160CT
X80417est31.7 F
48CT
43.7 F
38.MMHAP58FLE5.seqrandom43.7 F
56TC
40.MMHAP37FRF10.seqrandom43.7 F
31TC
47TC
44.8 F
D11Mit38.2genetic marker44.8 F
80TC
45.34105 P
D11Mit369genetic marker45.34105 P
23CT
49.2 F
Z49085est49.2 F
49CT
62AC
84CA
98GA
50.3 F
18.MMHAP86FRF9.seqrandom50.3 P to 50.3 F
48TC
53.6 P
34.MHAa63g10.seqrandom53.6 P
41AG
102TC
55.75 F
45.MMHAP33FRG12.seqrandom53.6 F to 57.9 F
35AG
61.2 F
L12687est61.2 F
128CT
MHAa81g3.seqrandom62.3 F to 60.1 P
86CG
63.4 F
Results_ER_9_1_95_3_41.seqrandom63.4 P to 63.4 F
24CA
79.8 P
D11Mit103.1genetic marker79.8 P
30CT
Chr12
2.75 F
10.MHAa91e10.seqrandom2.2 F to 3.3 F
51AG
85TC
135GA
MHAa34f9.seqrandom2.2 F to 3.3 F
36TC
3.3 P
47.MMHAP44FLH5.seqrandom3.3 P
36TG
59TC
5.5 F
16.MMHAP46FRF7.seqrandom5.5 F to 5.5 P
30TA
93CT
99CT
139GA
18.MMHAP42FLF3.seqrandom5.5 F to 5.5 P
108CA
9.8 F
38.MMHAP88FRE11.seqrandom9.8 P to 9.8 F
100CT
X60703est9.8 F
37GT
72CT
103GA
10.35 F
14.MMHAP86FLE2.seqrandom9.8 F to 10.9 F
107AT
13.65 F
24.MMHAP34FRH9.seqrandom13.1 F to 14.2 F
53AT
23.0 F
17.MMHAP9FRF8.seqrandom23.0 F
36TC
67AG
Z11664est23.0 F
102GA
36.1 F
Z46227est36.1 F
140TC
51.4 P
D12Mit17.1genetic marker51.4 P
106CT
57.35 F
M86750est56.8 F to 57.9 F
34AG
60.1 P
D12Mit41.1genetic marker60.1 P
88GT
Chr13
2.2 F
26.MMHAP70FLA5.seqrandom2.2 F
104GA
6.6 F
22.MMHAP67FRH7.seqrandom6.6 F to 6.6 P
101AG
7.7 F
MHAa67f1.seqrandom7.7 F
65AG
146AG
9.8 F
13.MMHAP28FRE7.seqrandom9.8 F
121GA
15.3 F
20.MMHAP22FRG8.seqrandom15.3 P to 15.3 F
39CA
91GT
24.0 F
40.MMHAP84FRF10.seqrandom24.0 F
77GA
97AT
MHAa34f2.seqrandom24.0 F
25TC
25.1 F
31.MMHAP76FRC10.seqrandom25.1 F
154CG
47.MHAa95d11.seqrandom25.1 F
33AG
37.2 F
11.MMHAP69FLD2.seqrandom37.2 F
31CT
M62766est37.2 F
25AG
37.75 F
06.MMHAP34FLB3.seqrandom37.2 F to 38.3 F
61TG
38.3 F
D37797est38.3 P to 38.3 F
76GA
99AG
130AG
136TC
39.3 P
45.MMHAP5FRG12.seqrandom39.3 P
51AT
Chr14
0.0 P
30.MMHAP88FRB12.seqrandom0.0 P
29TC
2.2 F
MHAa7c2.seqrandom2.2 F
90AG
25.1 P
U22516est25.1 P
21GT
27.3 P
37.MMHAP64FLE4.seqrandom27.3 P
62AG
109TA
38.3 F
19.MHAa43d7.seqrandom38.3 F
48CA
84TG
52.5 F
MHAa70g10.seqrandom52.5 F
117GA
69.9 F
MHAa67g1.seqrandom69.9 F
120TC
Chr15
14.2 F
X97817est14.2 F
40AG
16.4 F
D15Mit139.2genetic marker16.4 F
153CT
29.5 F
03.MMHAP35FRA9.seqrandom29.5 F
50GT
04.MMHAP9FLB1.seqrandom29.5 F
51TG
34.MMHAP75FRD10.seqrandom29.5 F
57AG
77AC
87GA
32.8 F
M21734est32.8 F
63GT
35.0 F
M64849est35.0 F
99CT
123CG
U11075est35.0 F
95GA
56.8 F
10.MMHAP5FLD1.seqrandom56.8 F
143GA
59 F
M95545est57.9 F to 60.1 F
48TC
61.2 P
D15Mit97.2genetic marker61.2 P
50CT
Chr16
3.3 F
Results_ER_9_1_95_2_24.seqrandom3.3 F
140TG
4.4 F
R74919est4.4 F
28GA
82AG
4.4 P
D16Mit192.2genetic marker4.4 P
89CA
7.7 F
R75266est7.7 F
49GA
112TA
9.8 F
44.MMHAP75FRG11.seqrandom9.8 F
149GT
25.1 P
38.MMHAP44FLE5.seqrandom25.1 P
61GT
81TC
118CT
34.45 F
Results_ER_8_29_95_1_16.seqrandom33.9 F to 35.0 F
80TC
48.65 F
34.MMHAP94FRD10.seqrandom45.9 F to 51.4 P
57CT
73GA
Chr17
2.75 F
L00653est2.2 F to 3.3 F
72AC
6.88799 P
MHAa34f3.seqrandom6.88799 P
22AT
10.35 F
19.MMHAP33FRG7.seqrandom9.8 F to 10.9 F
86AG
35.MMHAP28FRD11.seqrandom9.8 F to 10.9 F
78GC
M55637est9.8 F to 10.9 F
58GA
97TC
10.9 F
15.MMHAP54FLE3.seqrandom10.9 F
118GA
150AC
27.3 F
38.MMHAP11FLE5.seqrandom27.3 F
82GA
140GA
33.9 F
30.MMHAP66FLB6.seqrandom33.9 F
130CT
mHAa21e8.seqrandom33.9 F to 33.9 P
155GT
50.3 P
D17Mit123.2genetic marker50.3 P
26GT
Chr18
9.8 F
14.MMHAP9FRE8.seqrandom9.8 F
24CT
41TG
60GA
74AT
85TC
MHAa84h6.seqrandom9.8 F
132CA
X58995est9.8 F to 9.8 P
39TA
9.8 P
40.MMHAP11FRF10.seqrandom9.8 P
101GT
15.3 F
12_5_2_2.seqrandom15.3 F
49TC
134CG
9_15_61lon.seqrandom15.3 F
67CT
9_15_65lon.seqrandom15.3 F
96GA
19.7 F
MHAa30e3.seqrandom19.7 F to 19.7 P
63GA
19.7 P
24.MMHAP33FRH9.seqrandom19.7 P
48CG
25.1 F
28.MMHAP7FRB10.seqrandom25.1 F
42GC
Chr19
13.1 F
D19Mit110genetic marker13.1 F
28GT
D19Mit16.1genetic marker13.1 F
35TG
16.95 F
47.MMHAP5FLH5.seqrandom16.4 P to 17.5 F
85GA
34.45 F
20.MMHAP32FLG2.seqrandom35.0 F to 33.9 P
76TC
26.MMHAP54FLA5.seqrandom35.0 F to 33.9 P
126TC
35.0 F
MHAa67a4.seqrandom35.0 F
37CT
94GA
44.8 P
30.MMHAP84FLB6.seqrandom44.8 P
87TC
ChrX
24.0 P
28.MMHAP28FRB10.seqrandom24.0 P
23TC
29.5 P
12_5_11_6.seqrandom29.5 P
73AG

For further information contact:

Kerstin Lindblad-Toh