About

GenePattern combines a powerful scientific workflow platform with more than 90 computational and visualization tools for the analysis of genomic data.
download online quickstart

Features

Analyses

  • Gene Expression Analysis: Standard and novel clustering, prediction, and marker selection methodologies.
  • Proteomics: Peak detection, noise subtraction, peak matching, and more for advanced analysis of MALDI, SELDI, and LC-MS data.
  • SNP Analysis: Analyze SNP microarrays using normalization, copy number estimation, smoothing, LOH determination, and visualization.
  • Data Format Conversion: Import and export data, normalize and filter data, convert gene identifiers, and more.

 

Citation

  • Cite Genepattern:
    Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP (2006) GenePattern 2.0 Nature Genetics 38 no. 5 (2006): pp500-501 doi:10.1038/ng0506-500.

Current version

Release: 3.1
Release date: 2/19/2008