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Haploview Documentation

Haploview Documentation

Table of Contents

1. Using Haploview

Loading a Dataset
Data Quality Checks
LD Display
Blocks and Haplotypes
Tagger
Association Tests
Permutation Testing
PLINK

Input File Formats
Output Files
Export Options
Auxiliary Input Files

3. Command Line Options

General Options
Input Options
Data Check Options
Block Output Options
Other Output Options
Association Output Options
Tagging Output Options

4. About Haploview

System Requirements
Known Issues
Updates
Change Log