1. List of all elements and neighboring genes in the human genome:
- chr16:72381161-72381464      +   304      Extend 1K
- chr5:92477633-92477721      -   89      Extend 1K
- chr6:10178370-10178482      -   113      Extend 1K
- NM_153003 -9574,0,0 - Homo sapiens orofacial cleft 1 candidate 1 (OFCC1), mRNA.
- chr6:50137095-50137171      +   77      Extend 1K
- ENST00000322246 -17739,0,0 - Defensin beta 112 (Fragment)
- chr6:97777352-97777449      -   98      Extend 1K
- NM_198468 60324,0,0 - Homo sapiens chromosome 6 open reading frame 167 (C6orf167), mRNA.
- chr1:87821979-87822069      +   84      Extend 1K
- chr8:25768695-25768773      +   79      Extend 1K
- NM_022659 34466,0,0 - Homo sapiens early B-cell factor 2 (EBF2), mRNA.
- chr13:71345598-71345730      -   133      Extend 1K
- NM_004392 -6399,0,0 - Homo sapiens dachshund homolog 1 (Drosophila) (DACH1), transcript
- chr10:31429044-31429124      +   81      Extend 1K
- chr13:35243053-35243162      -   98      Extend 1K
- chr1:88454214-88454299      +   75      Extend 1K
- chr7:95254364-95254444      +   81      Extend 1K
- NM_004411 207812,0,0 + Homo sapiens dynein, cytoplasmic, intermediate polypeptide 1
- chr6:1799265-1799346      +   76      Extend 1K
- NM_001500 391499,0,0 - Homo sapiens GDP-mannose 4,6-dehydratase (GMDS), mRNA.
- chr3:170405678-170405748      -   71      Extend 1K
- NM_005241 -58953,0,0 - Homo sapiens ecotropic viral integration site 1 (EVI1), mRNA.
- chr1:7503924-7504006      +   77      Extend 1K
- chr9:94667608-94667686      +   77      Extend 1K
- NM_032823 99060,0,0 + Homo sapiens chromosome 9 open reading frame 3 (C9orf3), mRNA.
- chr15:34378258-34378369      -   52      Extend 1K
- chr16:72203741-72203822      -   82      Extend 1K
- chr3:76450456-76450536      +   0      Extend 1K
- chr18:73790375-73790481      -   48      Extend 1K
- chr8:96575132-96575211      -   80      Extend 1K
- chr8:49749943-49750028      +   86      Extend 1K
- chr9:73214830-73214899      +   65      Extend 1K
- chr4:111965540-111965623      -   73      Extend 1K
- NM_153426 -49511,0,0 - Homo sapiens paired-like homeodomain transcription factor 2
- chr6:9691649-9691729      -   81      Extend 1K
- chr3:195161491-195161581      +   73      Extend 1K
- chr17:56943642-56943719      -   78      Extend 1K
- chr1:213192261-213192361      -   93      Extend 1K
- NM_001438 92841,0,0 - Homo sapiens estrogen-related receptor gamma (ESRRG), transcript
- chr4:139293702-139293816      +   102      Extend 1K
- chr2:59945241-59945322      -   34      Extend 1K
- chr10:125095560-125095672      -   63      Extend 1K
- chr21:27809650-27809727      +   0      Extend 1K
- chr10:119603488-119603557      -   70      Extend 1K
- chr6:51272319-51272421      -   103      Extend 1K
- chr2:176066019-176066094      -   76      Extend 1K
- chr14:42432327-42432405      +   0      Extend 1K
- chr14:53826442-53826522      -   81      Extend 1K
- chr3:174832452-174832537      -   43      Extend 1K
- NM_014932 233507,0,0 + Homo sapiens neuroligin 1 (NLGN1), mRNA.
- chr5:102053271-102053349      -   79      Extend 1K
- chr15:55756257-55756335      -   79      Extend 1K
- NM_015532 -29949,0,0 + Homo sapiens glutamate receptor, ionotropic, N-methyl
- chr1:107325841-107325934      -   66      Extend 1K
- chr11:16322974-16323036      -   63      Extend 1K
- NM_033326 131458,0,0 - Homo sapiens SRY (sex determining region Y)-box 6 (SOX6), mRNA.
- chr6:16874302-16874374      -   72      Extend 1K
- NM_000332 -4674,0,0 - Homo sapiens ataxin 1 (ATXN1), mRNA.
- chr10:130203936-130204020      +   85      Extend 1K
- chr1:143620149-143620253      +   105      Extend 1K
- NM_183372 -67960,0,0 - Homo sapiens hypothetical protein LOC200030 (LOC200030), mRNA.
- chr1:87603939-87604044      -   106      Extend 1K
- chr3:170451788-170451870      +   54      Extend 1K
- NM_004991 412306,0,0 - Homo sapiens myelodysplasia syndrome 1 (MDS1), mRNA.
- chr1:95447040-95447124      +   83      Extend 1K
- chr2:232749259-232749343      +   85      Extend 1K
- NM_152383 97361,0,0 + Homo sapiens hypothetical protein MGC42174 (MGC42174), mRNA.
- chr2:60698556-60698650      -   95      Extend 1K
- NM_018014 -6366,0,0 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein)
- chr14:98974326-98974404      +   32      Extend 1K
- NM_032233 42575,0,0 - Homo sapiens chromosome 14 open reading frame 154 (C14orf154),
- chr6:131977138-131977213      -   76      Extend 1K
- NM_015979 13843,0,0 - Homo sapiens cofactor required for Sp1 transcriptional activation,
- chr2:145627340-145627428      -   89      Extend 1K
- chr1:83042147-83042223      -   77      Extend 1K
- chr2:60698680-60698750      +   71      Extend 1K
- NM_018014 -6466,0,0 - Homo sapiens B-cell CLL/lymphoma 11A (zinc finger protein)
- chr6:91060926-91061025      -   99      Extend 1K
- NM_021813 2157,0,0 - Homo sapiens BTB and CNC homology 1, basic leucine zipper
- chr7:14234776-14234837      +   62      Extend 1K
- NM_004080 419291,0,0 - Homo sapiens diacylglycerol kinase, beta 90kDa (DGKB), transcript
- chr8:116593481-116593557      +   73      Extend 1K
- NM_014112 156872,0,0 - Homo sapiens trichorhinophalangeal syndrome I (TRPS1), mRNA.
- chr1:144807344-144807448      +   105      Extend 1K
- ENST00000344770 -98301,0,0 - 49 kDa protein
- chr6:37979778-37979922      -   132      Extend 1K
- NM_021943 84168,0,0 + Homo sapiens testis expressed sequence 27 (TEX27), mRNA.
- chr11:108429642-108429710      -   57      Extend 1K
- chr2:176249982-176250065      -   84      Extend 1K
- chr3:157517759-157517866      +   102      Extend 1K
- NM_172159 26232,0,0 + Homo sapiens potassium voltage-gated channel, shaker-related
- chr3:181954964-181955028      +   55      Extend 1K
- ENST00000273654 -45713,0,0 - PREDICTED: hypothetical protein DKFZp434A128
- chr2:200273327-200273443      +   80      Extend 1K
- chr1:87535445-87535544      +   88      Extend 1K
- chr1:81160527-81160629      -   0      Extend 1K
- chr11:101607656-101607733      +   17      Extend 1K
- ENST00000345877 121116,0,1 + 65 kDa Yes-associated protein (YAP65)
- chr4:106979773-106979877      +   61      Extend 1K
- NM_020395 7556,0,0 - Homo sapiens hypothetical nuclear factor SBBI22 (LOC57117), mRNA.
- chr19:35760022-35760099      -   78      Extend 1K
- chr10:90216700-90216787      -   0      Extend 1K
- NM_018363 116201,0,0 - Homo sapiens chromosome 10 open reading frame 59 (C10orf59), mRNA.
- chr8:89115038-89115119      -   57      Extend 1K
- chr18:61211216-61211283      +   0      Extend 1K
- chrX:1188136-1188207      -   57      Extend 1K
- chr5:53217049-53217124      -   72      Extend 1K
- ENST00000332313 425036,0,1 - ADP-ribosylation factor related protein 2 (ARFRP2), mRNA
- chr13:58602180-58602245      -   64      Extend 1K
- chr9:27716827-27716904      +   78      Extend 1K
- chr4:182782972-182783051      +   55      Extend 1K
- chrX:125262696-125262805      +   3      Extend 1K
- chr3:43178904-43178981      +   78      Extend 1K
- NM_032806 -56412,0,0 - Homo sapiens hypothetical protein FLJ14566 (FLJ14566), mRNA.
- chr3:17552003-17552084      +   32      Extend 1K
- NM_014744 205319,0,0 - Homo sapiens TBC1 domain family, member 5 (TBC1D5), mRNA.
- chr4:150066183-150066251      -   64      Extend 1K
- chr2:139263882-139263968      -   56      Extend 1K
- NM_007226 107575,0,0 - Homo sapiens neurexophilin 2 (NXPH2), mRNA.
- chrX:144009184-144009264      -   30      Extend 1K
- NM_001009614 -24709,0,0 +
- chr19:34073518-34073586      +   45      Extend 1K
- chr6:107721505-107721565      +   61      Extend 1K
- NM_020381 165883,0,0 - Homo sapiens chromosome 6 open reading frame 210 (C6orf210), mRNA.
- chr1:63138930-63139044      +   115      Extend 1K
- chrX:96220274-96220352      +   79      Extend 1K
- NM_007309 474419,0,0 + Homo sapiens diaphanous homolog 2 (Drosophila) (DIAPH2), transcript
- chr1:107217441-107217529      +   89      Extend 1K
- NM_018137 -94009,0,0 + Homo sapiens HMT1 hnRNP methyltransferase-like 6 (S. cerevisiae)
- chr8:74695097-74695210      -   114      Extend 1K
- NM_014393 126401,0,0 - Homo sapiens staufen, RNA binding protein, homolog 2 (Drosophila)
- chr6:98742999-98743077      +   79      Extend 1K
- chr1:25010820-25010899      +   0      Extend 1K
- NM_004350 -9225,0,0 - Homo sapiens runt-related transcription factor 3 (RUNX3), mRNA.
- chr8:106177374-106177467      -   91      Extend 1K
- chr5:123141497-123141552      +   56      Extend 1K
- chr9:82626225-82626334      -   51      Extend 1K
- chr12:16594761-16594841      -   44      Extend 1K
- ENST00000261169 56160,0,1 - LIM-only protein 3 (Neuronal specific transcription factor DAT1) (Rhombotin-3)
- chr6:8223931-8224006      -   74      Extend 1K
- chr2:44902894-44902996      -   103      Extend 1K
- NM_024766 402141,0,0 + Homo sapiens hypothetical protein FLJ23451 (FLJ23451), mRNA.
- chrX:26103099-26103170      +   60      Extend 1K
- chr10:33530062-33530140      +   53      Extend 1K
- NM_001024629 133316,0,0 -
- chr2:50494910-50494985      -   0      Extend 1K
- NM_138735 -8440,0,0 - Homo sapiens neurexin 1 (NRXN1), transcript variant beta, mRNA.
- chr19:34407750-34407835      -   0      Extend 1K
- NM_006003 -11881,0,0 - Homo sapiens ubiquinol-cytochrome c reductase, Rieske iron-sulfur
- chr3:115902353-115902436      +   38      Extend 1K
- NM_015642 446381,0,0 - Homo sapiens zinc finger and BTB domain containing 20 (ZBTB20),
- chr6:45709987-45710046      +   53      Extend 1K
- chr20:51073880-51073959      +   40      Extend 1K
- NM_173485 51528,0,0 + Homo sapiens chromosome 20 open reading frame 17 (C20orf17), mRNA.
- chr12:84320856-84320935      -   80      Extend 1K
- chrX:26215353-26215410      +   58      Extend 1K
- chr1:87533835-87533947      -   113      Extend 1K
- chr13:57868523-57868611      +   89      Extend 1K
- chr10:118108366-118108443      +   0      Extend 1K
- chr5:44293984-44294067      +   71      Extend 1K
- chr4:85719029-85719092      +   64      Extend 1K
- chr15:68141514-68141606      -   93      Extend 1K
- NM_005078 34606,0,0 - Homo sapiens transducin-like enhancer of split 3 (E(sp1) homolog,
- chr15:32039772-32039857      -   74      Extend 1K
- NM_012125 -57947,0,0 + Homo sapiens cholinergic receptor, muscarinic 5 (CHRM5), mRNA.
- chr5:174066816-174066882      -   45      Extend 1K
- NM_002449 -17391,0,0 + Homo sapiens msh homeo box homolog 2 (Drosophila) (MSX2), mRNA.
- chr14:96971904-96971983      +   80      Extend 1K
- chr6:131976559-131976627      +   69      Extend 1K
- NM_015979 14429,0,0 - Homo sapiens cofactor required for Sp1 transcriptional activation,
- chr5:112429987-112430097      -   81      Extend 1K
- NM_002387 228104,0,0 - Homo sapiens mutated in colorectal cancers (MCC), mRNA.
- chr9:18264782-18264882      +   66      Extend 1K
- chr2:138614863-138614940      +   65      Extend 1K
- chr15:96076897-96076971      +   54      Extend 1K
- chr9:7027448-7027525      +   0      Extend 1K
- NM_015061 279366,0,0 + Homo sapiens jumonji domain containing 2C (JMJD2C), mRNA.
- chr10:8616094-8616140      -   33      Extend 1K
- chr7:113150015-113150081      +   67      Extend 1K
- NM_002711 2934,0,0 - Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit
- chrX:29661081-29661167      +   85      Extend 1K
- NM_014271 1295866,0,0 + Homo sapiens interleukin 1 receptor accessory protein-like 1
- chr7:18211637-18211713      -   77      Extend 1K
- NM_014707 -96971,0,0 + Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 3,
- chr5:91646497-91646579      -   83      Extend 1K
- chr2:81381802-81381901      +   95      Extend 1K
- chr6:147772470-147772547      +   23      Extend 1K
- chr5:77566900-77567013      -   43      Extend 1K
- NM_003664 59271,0,0 - Homo sapiens adaptor-related protein complex 3, beta 1 subunit
- chr13:111625939-111626003      +   53      Extend 1K
- chr5:88499220-88499293      +   0      Extend 1K
- chr7:33341290-33341353      +   39      Extend 1K
- NM_014451 398877,0,0 + Homo sapiens parathyroid hormone-responsive B1 gene (B1),
- chr7:31220127-31220206      +   80      Extend 1K
- NM_022728 -66428,0,0 - Homo sapiens neurogenic differentiation 6 (NEUROD6), mRNA.
- chr3:71183071-71183145      +   75      Extend 1K
- NM_032682 532685,0,0 - Homo sapiens forkhead box P1 (FOXP1), mRNA.
- chr3:115623181-115623242      +   20      Extend 1K
- NM_015642 725575,0,0 - Homo sapiens zinc finger and BTB domain containing 20 (ZBTB20),
- chr16:25824743-25824837      -   95      Extend 1K
- NM_006040 213896,0,0 + Homo sapiens heparan sulfate (glucosamine) 3-O-sulfotransferase 4
- chr11:16150411-16150494      +   72      Extend 1K
- NM_033326 304000,0,0 - Homo sapiens SRY (sex determining region Y)-box 6 (SOX6), mRNA.
- chr6:92814491-92814548      +   35      Extend 1K
- chr18:48548513-48548576      +   64      Extend 1K
- NM_005215 427358,0,0 + Homo sapiens deleted in colorectal carcinoma (DCC), mRNA.
- chr13:78341002-78341110      -   109      Extend 1K
- chr18:21275197-21275272      -   76      Extend 1K
- NM_015461 -89158,0,0 - Homo sapiens zinc finger protein 521 (ZNF521), mRNA.
- chr10:126369804-126369907      -   86      Extend 1K
- NM_014661 53013,0,0 - Homo sapiens KIAA0140 (KIAA0140), mRNA.
- chr7:26571989-26572110      -   116      Extend 1K
- NM_003930 105471,0,0 - Homo sapiens src family associated phosphoprotein 2 (SCAP2), mRNA.
- chr6:124844967-124845049      -   39      Extend 1K
- NM_153355 677980,0,0 + Homo sapiens T-cell lymphoma breakpoint associated target 1
- chr2:144531765-144531834      +   70      Extend 1K
- chr2:66604277-66604325      +   0      Extend 1K
- NM_002398 30095,0,0 + Homo sapiens Meis1, myeloid ecotropic viral integration site 1
- chr7:27898435-27898504      -   70      Extend 1K
- NM_175061 94961,0,0 - Homo sapiens juxtaposed with another zinc finger gene 1 (JAZF1),
- chr6:21944677-21944739      +   49      Extend 1K
- chr3:7638471-7638526      -   0      Extend 1K
- NM_181875 760545,0,0 + Homo sapiens glutamate receptor, metabotropic 7 (GRM7), transcript
- chr11:2860209-2860265      +   51      Extend 1K
- NM_183233 -17317,0,0 + Homo sapiens solute carrier family 22 (organic cation transporter),
- chr4:4727260-4727324      -   65      Extend 1K
- NM_016930 -65477,0,0 - Homo sapiens syntaxin 18 (STX18), mRNA.
- chr11:30773127-30773171      +   45      Extend 1K
- chr8:94979361-94979415      -   0      Extend 1K
- NM_018444 -18976,0,0 + Homo sapiens protein phosphatase 2C, magnesium-dependent, catalytic
- chr5:72951869-72951949      +   6      Extend 1K
- NM_023039 -54695,0,0 - Homo sapiens ankyrin repeat, family A (RFXANK-like), 2 (ANKRA2),
- chr1:79324261-79324338      -   78      Extend 1K
- chrX:123946388-123946475      -   59      Extend 1K
- chr8:75620713-75620774      -   23      Extend 1K
- chr1:61330228-61330305      +   78      Extend 1K
- NM_005595 69913,0,0 + Homo sapiens nuclear factor I/A (NFIA), mRNA.
- chr7:38997304-38997380      -   17      Extend 1K
- NM_007252 177657,0,0 + Homo sapiens POU domain, class 6, transcription factor 2 (POU6F2),
- chrX:89910581-89910667      -   0      Extend 1K
- chr2:67616329-67616394      +   50      Extend 1K
- chr13:64241756-64241853      +   98      Extend 1K
- ENST00000355561 -38939,0,0 + 17 kDa protein
- chr1:174932966-174933009      +   44      Extend 1K
- NM_170692 137680,0,0 + Homo sapiens RAS protein activator like 2 (RASAL2), transcript
- chr9:20332451-20332526      +   47      Extend 1K
- chr1:88739230-88739293      -   64      Extend 1K
- chr5:124488709-124488788      -   64      Extend 1K
- chr6:44732962-44733071      -   86      Extend 1K
- chr5:13747425-13747504      -   61      Extend 1K
- NM_001369 250085,0,0 - Homo sapiens dynein, axonemal, heavy polypeptide 5 (DNAH5), mRNA.
- chr19:34576761-34576832      -   0      Extend 1K
- chr6:148626449-148626518      +   14      Extend 1K
- NM_015278 -78972,0,0 + Homo sapiens SAM and SH3 domain containing 1 (SASH1), mRNA.
- chr18:74361888-74362028      -   133      Extend 1K
- chrX:10572083-10572201      -   119      Extend 1K
- NM_033290 39160,0,0 - Homo sapiens midline 1 (Opitz/BBB syndrome) (MID1), transcript
- chr10:77329970-77330077      +   108      Extend 1K
- NM_032024 117446,0,0 + Homo sapiens chromosome 10 open reading frame 11 (C10orf11), mRNA.
- chr6:95948578-95948686      -   109      Extend 1K
- chr5:88096917-88097010      -   55      Extend 1K
- NM_002397 117770,0,0 - Homo sapiens MADS box transcription enhancer factor 2, polypeptide
- chr5:164509314-164509407      +   94      Extend 1K
- chr5:102850627-102850714      -   88      Extend 1K
- chr1:228977806-228977889      +   84      Extend 1K
- NM_020808 -20665,0,0 - Homo sapiens signal-induced proliferation-associated 1 like 2
- chr17:53491626-53491706      -   81      Extend 1K
- NM_080677 -24171,0,0 + Homo sapiens dynein light chain 2 (Dlc2), mRNA.
- chr5:117526180-117526255      +   76      Extend 1K
- chr13:57116847-57116923      +   70      Extend 1K
- NM_014459 12903,0,0 + Homo sapiens protocadherin 17 (PCDH17), mRNA.
- chr2:45579411-45579477      +   67      Extend 1K
- NM_018079 170577,0,0 - Homo sapiens hypothetical protein FLJ10379 (FLJ10379), mRNA.
- chr4:182436660-182436720      +   61      Extend 1K
- chr14:33032723-33032774      -   52      Extend 1K
- NM_173159 554450,0,0 + Homo sapiens neuronal PAS domain protein 3 (NPAS3), mRNA.
- chr1:90285090-90285136      +   47      Extend 1K
2. Multi-sequence aligment among all paralogous elements